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Find names of all variables

Source: R/find_variables.R
find_variables.Rd

Returns a list with the names of all variables, including response value and random effects.

Usage

find_variables(
  x,
  effects = "all",
  component = "all",
  flatten = FALSE,
  verbose = TRUE
)

Arguments

x

A fitted model.

effects

Should variables for fixed effects, random effects or both be returned? Only applies to mixed models. May be abbreviated.

component

Should all predictor variables, predictor variables for the conditional model, the zero-inflated part of the model, the dispersion term or the instrumental variables be returned? Applies to models with zero-inflated and/or dispersion formula, or to models with instrumental variable (so called fixed-effects regressions). May be abbreviated. Note that the conditional component is also called count or mean component, depending on the model.

flatten

Logical, if TRUE, the values are returned as character vector, not as list. Duplicated values are removed.

verbose

Toggle warnings.

Value

A list with (depending on the model) following elements (character vectors):

  • response, the name of the response variable

  • conditional, the names of the predictor variables from the conditional model (as opposed to the zero-inflated part of a model)

  • cluster, the names of cluster or grouping variables

  • dispersion, the name of the dispersion terms

  • instruments, the names of instrumental variables

  • random, the names of the random effects (grouping factors)

  • zero_inflated, the names of the predictor variables from the zero-inflated part of the model

  • zero_inflated_random, the names of the random effects (grouping factors)

Note

The difference to find_terms() is that find_variables() returns each variable name only once, while find_terms() may return a variable multiple times in case of transformations or when arithmetic expressions were used in the formula.

Model components

Possible values for the component argument depend on the model class. Following are valid options:

  • "all": returns all model components, applies to all models, but will only have an effect for models with more than just the conditional model component.

  • "conditional": only returns the conditional component, i.e. "fixed effects" terms from the model. Will only have an effect for models with more than just the conditional model component.

  • "smooth_terms": returns smooth terms, only applies to GAMs (or similar models that may contain smooth terms).

  • "zero_inflated" (or "zi"): returns the zero-inflation component.

  • "dispersion": returns the dispersion model component. This is common for models with zero-inflation or that can model the dispersion parameter.

  • "instruments": for instrumental-variable or some fixed effects regression, returns the instruments.

  • "location": returns location parameters such as conditional, zero_inflated, smooth_terms, or instruments (everything that are fixed or random effects - depending on the effects argument - but no auxiliary parameters).

  • "distributional" (or "auxiliary"): components like sigma, dispersion, beta or precision (and other auxiliary parameters) are returned.

Examples

data(cbpp, package = "lme4")
data(sleepstudy, package = "lme4")
# some data preparation...
cbpp$trials <- cbpp$size - cbpp$incidence
sleepstudy$mygrp <- sample(1:5, size = 180, replace = TRUE)
sleepstudy$mysubgrp <- NA
for (i in 1:5) {
  filter_group <- sleepstudy$mygrp == i
  sleepstudy$mysubgrp[filter_group] <-
    sample(1:30, size = sum(filter_group), replace = TRUE)
}

m1 <- lme4::glmer(
  cbind(incidence, size - incidence) ~ period + (1 | herd),
  data = cbpp,
  family = binomial
)
find_variables(m1)
#> $response
#> [1] "incidence" "size"     
#> 
#> $conditional
#> [1] "period"
#> 
#> $random
#> [1] "herd"
#> 

m2 <- lme4::lmer(
  Reaction ~ Days + (1 | mygrp / mysubgrp) + (1 | Subject),
  data = sleepstudy
)
#> boundary (singular) fit: see help('isSingular')
find_variables(m2)
#> $response
#> [1] "Reaction"
#> 
#> $conditional
#> [1] "Days"
#> 
#> $random
#> [1] "mysubgrp" "mygrp"    "Subject" 
#> 
find_variables(m2, flatten = TRUE)
#> [1] "Reaction" "Days"     "mysubgrp" "mygrp"    "Subject"