Half-violin Half-dot plot

Create a half-violin half-dot plot, useful for visualising the distribution and the sample size at the same time. The half violins are drawn with ggdist::stat_slab() and the dots with ggdist::geom_dots(), so this function needs the ggdist package (version 3.3.3 or later). When groups are dodged, as with fill mapped to a second variable, each half violin takes the right half of its dodge cell (the upper half in a horizontal plot, see geom_violinhalf()), and, with the default position_dots, its dots go in the other half. The dots stay in that half when the half violin is flipped, so they overlap it.

Usage

geom_violindot(
  mapping = NULL,
  data = NULL,
  trim = TRUE,
  scale = c("area", "count", "width"),
  show.legend = NA,
  inherit.aes = TRUE,
  dots_size = 0.7,
  dots_color = NULL,
  dots_fill = NULL,
  binwidth = NA,
  interval = FALSE,
  ...,
  position_dots = ggplot2::position_nudge(x = -0.025, y = 0),
  size_dots = dots_size,
  color_dots = dots_color,
  fill_dots = dots_fill
)

Arguments

mapping

Set of aesthetic mappings created by aes(). If specified and inherit.aes = TRUE (the default), it is combined with the default mapping at the top level of the plot. You must supply mapping if there is no plot mapping.

data

The data to be displayed in this layer. There are three options:

If NULL, the default, the data is inherited from the plot data as specified in the call to ggplot().

A data.frame, or other object, will override the plot data. All objects will be fortified to produce a data frame. See fortify() for which variables will be created.

A function will be called with a single argument, the plot data. The return value must be a data.frame, and will be used as the layer data. A function can be created from a formula (e.g. ~ head(.x, 10)).

trim

If TRUE (default), trim the tails of the half violins to the range of the data. If FALSE, extend the tails as ggplot2::geom_violin() does.

scale

If "area" (default), all half violins have the same area (before trimming the tails). If "count", areas are scaled proportionally to the number of observations. If "width", all half violins have the same maximum width.

show.legend

logical. Should this layer be included in the legends? NA, the default, includes if any aesthetics are mapped. FALSE never includes, and TRUE always includes. It can also be a named logical vector to finely select the aesthetics to display. To include legend keys for all levels, even when no data exists, use TRUE. If NA, all levels are shown in legend, but unobserved levels are omitted.

inherit.aes

If FALSE, overrides the default aesthetics, rather than combining with them. This is most useful for helper functions that define both data and aesthetics and shouldn't inherit behaviour from the default plot specification, e.g. annotation_borders().

binwidth

The bin width of the dots. The default, NA, lets ggdist::geom_dots() choose a bin width that fits the dots into the space beside each half violin. A number sets a fixed bin width, in the units of the value axis. Dodged groups leave the dots less room, so a fixed bin width can make them overflow it, with a warning from ggdist.

interval

Logical. If TRUE, add the median and the 66% and 95% quantile intervals of each group, drawn with ggdist::stat_slabinterval() without the slab, as in ggdist::stat_pointinterval(). Default is FALSE.

...

Other arguments passed to geom_violinhalf() and to ggdist::geom_dots(). The arguments of the density, the layout, and the interval (flip, stat, bw, kernel, bounds, drop, adjust, n, density, side, normalize, justification, fill_type, limits, p_limits, expand, breaks, outline_bars, slab_type, .width, point_interval, show_point, show_interval, fatten_point, arrow, and the point_ and interval_ aesthetics) go to the half violins only. colour does not reach the dots when color_dots is set, and fill does not reach them when fill_dots is set. As for the half violins, a width (or height) is the width of a whole violin, so the dots take half of it. position goes to the half violins and their interval, as in geom_violinhalf(). The default dots follow it only if it is "dodge" or made by ggplot2::position_dodge(). The dots of groups with fewer than two observations are still drawn.

position_dots

Position adjustment for dots, either as a string, or the result of a call to a position adjustment function. The default leaves a gap of 0.025 times the resolution of the categorical axis (0.06 with interval = TRUE) between the dots and the half violin, and dodges the dots with their half violins. In a dodged cell, the gap is at most half of the room beside the half violin (a quarter with interval = TRUE). A position that you set is used as given. Must be named in full, because position goes to the half violins.

size_dots, dots_size

Size adjustment for dots, passed to the dotsize argument of ggdist::geom_dots().

color_dots, dots_color

Color adjustment for dots.

fill_dots, dots_fill

Fill adjustment for dots.

Value

A list of ggplot2 layers.

Examples

library(ggplot2)
library(see)

ggplot(iris, aes(x = Species, y = Sepal.Length, fill = Species)) +
  geom_violindot() +
  theme_modern()


# The dots adapt to the scale of the data
ggplot(iris, aes(x = Species, y = Sepal.Length * 1000, fill = Species)) +
  geom_violindot(interval = TRUE) +
  theme_modern()